Description

Amber is a suite of biomolecular simulation programs. It began in the late 1970s and is maintained by an active development community.

Amber is a suite of biomolecular simulation programs. It began in the late 1970's, and is maintained by an active development community; see the history page* and the contributors page* for more information.

The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields* for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of simulation programs). Second, it is a package of molecular simulation programs* which includes source code and demos.

The updated AMD/HIP support in Amber22 can be downloaded here. See Download Amber* link for information on how to download the code.

Amber is developed in an active collaboration of David Case at Rutgers University, Tom Cheatham at the University of Utah, Ken Merz at Michigan State University, Adrian Roitberg at the University of Florida, Carlos Simmerling at SUNY-Stony Brook, Scott LeGrand at NVIDIA, Darrin York at Rutgers University, Ray Luo at UC Irvine, Junmei Wang at the University of Pittsburgh, Maria Nagan at Stony Brook, Ross Walker at GSK, and many others. Amber was originally developed under the leadership of Peter Kollman.

Conflex has created an Introduction to Amber in Japanese*.

*You will be directed to a third-party site

 

Single-Node Server Requirements


CPUs / GPUs

Operating Systems

ROCm Driver

X86_64 CPU(s)

AMD Instinct MI200 GPU(s)

AMD Instinct MI100 GPU(s)

Radeon Instinct MI50(S)

Ubuntu 18.04

Centos 8.3

ROCm version 4.2 or newer

 

Obtaining Application


AMD has verified this code runs on the listed AMD Instinct and Radeon Instinct GPUs.

 

License Information


Amber is licensed and distributed by the University of California.  AMD optimizations to the Amber code have been provided by AMD to the University of California and are incorporated into the Amber 20 codebase.  See https://ambermd.org/ for more information.

Additional third-party content in this container may be subject to additional licenses and restrictions. Third-party content is licensed to you directly by the third party that owns the content pursuant to the third-party license terms included with such content, and is not licensed to you by AMD. ALL LINKED THIRD-PARTY CONTENT IS MADE AVAILABLE BY AMD “AS IS” WITHOUT A WARRANTY OF ANY KIND. USE OF SUCH THIRD-PARTY CONTENT IS DONE AT YOUR SOLE DISCRETION AND UNDER NO CIRCUMSTANCES WILL AMD BE LIABLE TO YOU FOR ANY THIRD-PARTY CONTENT. YOU ASSUME ALL RISK AND ARE SOLELY RESPONSIBLE FOR ANY DAMAGES THAT MAY ARISE FROM YOUR USE OF THIRD-PARTY CONTENT.

 

Disclaimer


The information contained herein is for informational purposes only, and is subject to change without notice. While every precaution has been taken in the preparation of this document, it may contain technical inaccuracies, omissions and typographical errors, and AMD is under no obligation to update or otherwise correct this information. Advanced Micro Devices, Inc. makes no representations or warranties with respect to the accuracy or completeness of the contents of this document, and assumes no liability of any kind, including the implied warranties of noninfringement, merchantability or fitness for particular purposes, with respect to the operation or use of AMD hardware, software or other products described herein. No license, including implied or arising by estoppel, to any intellectual property rights is granted by this document. Terms and limitations applicable to the purchase or use of AMD’s products are as set forth in a signed agreement between the parties or in AMD's Standard Terms and Conditions of Sale. AMD, the AMD Arrow logo and combinations thereof are trademarks of Advanced Micro Devices, Inc. Other product names used in this publication are for identification purposes only and may be trademarks of their respective companies.

 

Notices and Attribution


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